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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHX13_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSMFGRED TNSSQWGEVH GPFMLEEIVC QAQNMLTSRG IFMKSNPLKY ALPLLLLQMS  60
   61 VIIVTSRLIF RVLQPLKQGM ISAQVLTGVV LGPSFLGHNV IYMNMFLPAG GKIIIQTLSN 120
  121 VGFVIHLFLL GLKIDGSIIR KAGSKAILIG TASYAFPFSL GNLTIMFISK TMGLPSDVIS 180
  181 CTSSAISLSS MTSFPVTTTV LAELNILNSE LGRLATHCSM VCEVCSWFVA LAFNLYTRDR 240
  241 TMTSLYALSM IIGLLLVIYF VFRPIIVWLT QRKTKSMDKK DVVPFFPVLL LLSIASLSGE 300
  301 AMGVHAAFGA FWLGVSLPDG PPLGTELAAK LEMFASNLFL PCFIAISGLQ TNFFEITESH 360
  361 EHHVVMIEII LLITYGCKFL GTAAASAYCQ TQIGDALCLA FLMCCQGIIE VYTTIVWKDA 420
  421 QVVDTECFNL VIITILFVTG ISRFLVVYLY DPSKRYKSKS KRTILNTRQH NLQLRLLLGL 480
  481 YNVENVPSMV NLLEATYPTR FNPISFFTLH LVELKGRAHA LLTPHHQMNK LDPNTAQSTH 540
  541 IVNAFQRFEQ KYQGALMAQH FTAAAPYSSI NNDICTLALD KKATLIVIPF HKQYAIDGTV 600
  601 GQVNGPIRTI NLNVLDAAPC SVAIFIDRGE TEGRRSVLMT NTWQNVAMLF IGGKDDAEAL 660
  661 ALCMRMAEKP DLNVTMIHFR HKSALQDEDY SDMSEYNLIS DFKSYAANKG KIHYVEEIVR 720
  721 DGVETTQVIS SLGDAYDMVL VGRDHDLESS VLYGLTDWSE CPELGVIGDM LTSPDFHFSV 780
  781 LVVHQQQGDD LLAMDDSYKL PNVEHQKIGD TGIQQRFSAE EGFTTIDLGK R

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle