YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQCSNNLLG ILNFFTFLLS IPILSAGIWL GKNAATECER FLDKPMVVLG IFLMFVSIAG  60
   61 LVGACCRVSC LLWLYLFAMF LLILLGFCFT IFAFAVTNRG AGEVISDRGY KEYHVADYSN 120
  121 WLQKRVNNAK NWERIRSCLM YSDVCSTYRT RYASINVEDF YKSNLNALQS GCCKPSNDCN 180
  181 FTYVNPTTWT KTPGPYKNED CNVWDNKPGT LCYDCEACKA GLLDNIKNSW KKVAKVNIVF 240
  241 LIFLIIVYSV GCCAFRNNRK RSW

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.57
Transmembrane Helix	8	31	0.88
Cytoplasmic	32	45	0.51
Transmembrane Helix	46	66	0.92
Non-Cytoplasmic	67	72	0.39
Transmembrane Helix	73	96	0.90
Cytoplasmic	97	235	0.58
Transmembrane Helix	236	255	0.91
Non-Cytoplasmic	256	263	0.50