YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR35_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.97
Transmembrane Helix	23	44	0.89
Non-Cytoplasmic	45	61	0.82
Transmembrane Helix	62	84	0.89
Cytoplasmic	85	92	0.71
Transmembrane Helix	93	112	0.95
Non-Cytoplasmic	113	132	0.84
Transmembrane Helix	133	153	0.92
Cytoplasmic	154	172	0.94
Transmembrane Helix	173	194	0.95
Non-Cytoplasmic	195	200	0.91
Transmembrane Helix	201	225	0.87
Cytoplasmic	226	296	0.98
Transmembrane Helix	297	320	0.90
Non-Cytoplasmic	321	339	0.90
Transmembrane Helix	340	361	0.90
Cytoplasmic	362	380	0.86
Transmembrane Helix	381	398	0.96
Non-Cytoplasmic	399	417	0.84
Transmembrane Helix	418	441	0.86
Cytoplasmic	442	452	0.89
Transmembrane Helix	453	476	0.85
Non-Cytoplasmic	477	495	0.92
Transmembrane Helix	496	517	0.91
Cytoplasmic	518	521	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDMEEKFE DWKGKEAIPG KHGGIRAASI VCVVVMMENI VFIANGFNFV KYFMGSMHYT  60
   61 PATAANMVTN FMGTSFLLTL FGGFIADSFV THFTTFIVFC CIELMGLILL TFQAHNPKLL 120
  121 PEKDKTPSTL QSAILFTGLY AMAIGTGGLK ASLPSHGGDQ IDRRNPRLIS RFFDWLYFSI 180
  181 CSGCLLAVTV VLWIEEKKGW IWSFNISVGI LATALCIFTV GLPFYRFKRP NGSPLKKIAI 240
  241 VIISAARNRN KSDLDEEMMR GLISIYKNNS HNKLKWIDKA TLNKNISETE VEETRTFLGL 300
  301 LPIFGSTIVM SCCVAQLSTF SAQQGMLMNK KLFHSFEIPV PSLTAIPLIF MLLSIPLYEF 360
  361 FGKKISSGNN NRSSSFNLKR IGLGLALSSV SMAVSAIVEA KRKHEVVHNN FRISVLWLVF 420
  421 QYLMLSVSDM LTLGGMLEFF YREAPSNMKS ISTALGWCST ALGFFLSTTL VEVTNAVTGR 480
  481 LGHQWLGGED LNKTRLELFY VLLCVLNTLN LLNYIFWAKR Y