YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8777296
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVTTSFVS FSPALMIFQK KSRRSSPNFR NRSTSLPIVS ATLSHIEEAA TTTNLIRQTN  60
   61 SISESLRNIS LADLDPGTAK LAIGILGPAL SAFGFLFILR IVMSWYPKLP VDKFPYVLAY 120
  121 APTEPILVQT RKVIPPLAGV DVTPVVWFGL VVAAAADAYE IVRFVAASTC AATKRTYAPA 180
  181 AMAAVEFATA AAACGDETNR LIIIESRFFK AIY

Type	Start	End	Confidence
Cytoplasmic	1	80	0.73
Transmembrane Helix	81	102	0.86
Non-Cytoplasmic	103	144	0.70
Transmembrane Helix	145	165	0.59
Cytoplasmic	166	213	0.70