YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10177870
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	153	0.98
Transmembrane Helix	154	174	0.88
Cytoplasmic	175	178	0.72
Transmembrane Helix	179	199	0.84
Non-Cytoplasmic	200	205	0.77
Transmembrane Helix	206	225	0.91
Cytoplasmic	226	233	0.72
Transmembrane Helix	234	257	0.91
Non-Cytoplasmic	258	263	0.74
Transmembrane Helix	264	284	0.93
Cytoplasmic	285	295	0.77
Transmembrane Helix	296	318	0.88
Non-Cytoplasmic	319	333	0.67
Transmembrane Helix	334	353	0.93
Cytoplasmic	354	369	0.76
Transmembrane Helix	370	386	0.65
Non-Cytoplasmic	387	390	0.46
Transmembrane Helix	391	410	0.55
Cytoplasmic	411	419	0.66
Transmembrane Helix	420	441	0.81
Non-Cytoplasmic	442	446	0.73
Transmembrane Helix	447	467	0.94
Cytoplasmic	468	475	0.71
Transmembrane Helix	476	498	0.85
Non-Cytoplasmic	499	507	0.74
Transmembrane Helix	508	530	0.87
Cytoplasmic	531	562	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFAVIGLT FLLLLGTSLS ARSDEETRER FYGNVVNSTA PGNGEGSIAK MFDRVLEKEF  60
   61 SENDSPEGSD GASFNSSVAD QQAEIETVAK VTHEKGKRND TQENNGTRPF QLQDVFSLEN 120
  121 EDSDDMTLID KKNNVFVMSN KKSKYPILQV DLRLISDLVV IIVFAAIGGI VFSCLGQPVI 180
  181 VGYLLAGSII GPGGLKFISE MVQVETVAQF GVVFLLFALG LEFSMTKLKV VGPVAVLGGL 240
  241 LQIVLLMFLC GVTALLCGAR LSEGIFVGAF LSMSSTAVVV KFLVERNSTS SLHGQVTIGI 300
  301 LIFQDCVVGL LFALLPVLGG NSGLLQGIIS MGKLLLILSI YLTVASLLTW SFVPRFLKLM 360
  361 IQLSSQTNEL YQLAAVAFCL LSAWCSDKLG LSLELGSFVA GVMLSTTEFA QHTLEQVLIL 420
  421 NSGRFCFAST CIGMLINVHF LWNHVDILLA SVILVIVIKT AIAAVVVKAF RYNMRISFHV 480
  481 GVLLAQIGEF AFVLLSRASN LHVIEGKMYL LLLGTTALSL VTTPLLFKLI PSAMNLGVLL 540
  541 RWFPSENSSP NEVILFSRSI YI