YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9294636
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALIRCCSS FSHTSGGQPP PRDKSRAPEI GKFATSIGYS VVRKPGDHPP FSKIIHSSSQ  60
   61 PKERQGKGIL QTPFASVGSL DKFSAFEIWM WQGIGRLKLP VMAVLLTNSL QMATPLEALA 120
  121 AEICEPESSM FSMPILLLVA LIGATVGGLL ARQRKGELQR LNEQLRQINA ALRRQAKIES 180
  181 YAPSLSYAPV GARIPDSEII VEPKKQELIS KLKTGKTFLR NQEPEKAYTE FKIALELAQS 240
  241 LKDPTEEKKA ARGLGASLQR QGKYREAIQY HSMVLAISKR ESEDSGITEA YGAIADCYTE 300
  301 LGDLEKAGKF YDTYIARLET D

Type	Start	End	Confidence
Cytoplasmic	1	98	0.87
Transmembrane Helix	99	115	0.74
Non-Cytoplasmic	116	129	0.71
Transmembrane Helix	130	151	0.92
Cytoplasmic	152	321	0.88