YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARAE4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSSGVRTQ RRSPRPLSLG GRKIITPTKF AYDHHNPDKV LDFVEMDCLE PKTKNNLTGK  60
   61 LLLVASLLIL AIIVISQSSS FTSPSAFSQR EEGVTHVLVT GGAGYIGSHA ALRLLRDSYR 120
  121 VTIVDNLSRG NLGAVKTLQQ LFPQTGRLQF IYADLGDPLA VEKIFSENAF DAVMHFAAVA 180
  181 YVGESTLYPL KYYHNITSNT LGVLEAMARH KVKKLIYSST CATYGEPEKM PITEDTPQVP 240
  241 INPYGKAKKM AEDMILDFSK NSDMAVMILR YFNVIGSDPG GRLGEAPRPE LREQGRISGA 300
  301 CFDAARGFIP GLQVKGTDYK TSDGTCIRDY IDVTDLVDAH VKALEKAQPR KVGIYNVGTG 360
  361 KGRSVKEFVE ACKKATGVEI KVDFLPRRPG DYAEVYSDPT KILKDLNWTA RFTNLQDSLQ 420
  421 VAWRWQKIHP HGYNSY

Type	Start	End	Confidence
Cytoplasmic	1	58	0.96
Transmembrane Helix	59	79	0.86
Non-Cytoplasmic	80	436	0.89