YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18398217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP  60
   61 SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ RKTISAGMVI LVSAIAALLL 120
  121 NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP 180
  181 LSIGRTRMES AAVGALWGCG HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG 240
  241 AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL 300
  301 PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA 360
  361 IIVSQFFGFS LY

Type	Start	End	Confidence
Cytoplasmic	1	102	0.96
Transmembrane Helix	103	125	0.87
Non-Cytoplasmic	126	153	0.55
Transmembrane Helix	154	178	0.64
Cytoplasmic	179	192	0.39
Transmembrane Helix	193	215	0.86
Non-Cytoplasmic	216	222	0.38
Transmembrane Helix	223	244	0.63
Cytoplasmic	245	274	0.65
Transmembrane Helix	275	295	0.61
Non-Cytoplasmic	296	304	0.74
Transmembrane Helix	305	328	0.90
Cytoplasmic	329	345	0.93
Transmembrane Helix	346	369	0.90
Non-Cytoplasmic	370	372	0.91