YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPKGRTNLN RSIIGGHDHG SILQLLLFLL LLSSHGGFKF VAGQATHGGS DVSGDSSRFD  60
   61 PTMAILMIVL VSVFFFLGFF SVYIRRCLER VMGMDYGNPN DAGNWLATNR QQARGLDASI 120
  121 IETFPTFQYS TVKTLRIGKE ALECSVCLNE FEDDETLRLI PKCCHVFHPG CIDAWLRSHT 180
  181 TCPLCRADLI PVPGESIVSI QIPGLVNDPP GSDPNGDRIR SLGSPDARLI ESVALTCNQS 240
  241 MPRRSMSTGW NLAGMFTNSD RTGQHSENLD RFTLRLPQDI HNKLVNPNLS KVHVALPQVM 300
  301 SSTRGYRTGS LGSERNYFYY ERFDQDGRLD RRPFSITPPY RTSSINHMSP GGSGGDKVRA 360
  361 SSPKSLLLAM RSPFDRLFLG KNNNVGENSS DHLRSCDATP SNTV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	42	0.89
Non-Cytoplasmic	43	62	0.92
Transmembrane Helix	63	84	0.96
Cytoplasmic	85	404	0.98