YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNDQDPIP FRPEDNNFSG SKTYAMSGKI MLSAIVILFF VVILMVFLHL YARWYLLRAR  60
   61 RRHLRRRSRN RRATMVFFTA DPSTAATSVV ASRGLDPNVI KSLPVFTFSD ETHKDPIECA 120
  121 VCLSEFEESE TGRVLPNCQH TFHVDCIDMW FHSHSTCPLC RSLVESLAGI ESTAAARERE 180
  181 VVIAVDSDPV LVIEPSSSSG LTDEPHGSGS SQMLREDSGR KPAAIEVPRR TFSEFEDELT 240
  241 RRDSPASQSF RSPMSRMLSF TRMLSRDRRS ASSPIAGAPP LSPTLSCRIQ MTESDIERGG 300
  301 EESR

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.94
Transmembrane Helix	30	52	0.92
Cytoplasmic	53	72	0.86
Transmembrane Helix	73	92	0.75
Non-Cytoplasmic	93	304	0.83