YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4191789, gi\|2...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	153	0.99
Transmembrane Helix	154	174	0.87
Cytoplasmic	175	179	0.75
Transmembrane Helix	180	199	0.87
Non-Cytoplasmic	200	205	0.80
Transmembrane Helix	206	226	0.90
Cytoplasmic	227	233	0.80
Transmembrane Helix	234	256	0.89
Non-Cytoplasmic	257	263	0.77
Transmembrane Helix	264	284	0.93
Cytoplasmic	285	295	0.82
Transmembrane Helix	296	318	0.83
Non-Cytoplasmic	319	326	0.64
Transmembrane Helix	327	346	0.91
Cytoplasmic	347	362	0.83
Transmembrane Helix	363	379	0.75
Non-Cytoplasmic	380	387	0.48
Transmembrane Helix	388	403	0.67
Cytoplasmic	404	416	0.74
Transmembrane Helix	417	438	0.90
Non-Cytoplasmic	439	443	0.81
Transmembrane Helix	444	467	0.90
Cytoplasmic	468	473	0.75
Transmembrane Helix	474	495	0.84
Non-Cytoplasmic	496	504	0.70
Transmembrane Helix	505	529	0.78
Cytoplasmic	530	574	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLTLLLIC TFFFFFSFAY SAESDNETDS VVTREINGTV VESNATSAKP REDSFADMID  60
   61 RALEKEFPDN DQNEVPDPGS FNNSVADQQA VLETVARVKP KKNETKTKEE KSFFNLDNEN 120
  121 GVEDTPRLID RKDNVFIMSN PKSKYPVLQL DLRLISDLVV VIVSATCGGI AFACAGQPVI 180
  181 TGYLLAGSII GPGGLSFVSE MVQVETVAQF GVIFLLFALG LEFSAAKLRV VRAVAIPGGL 240
  241 LQIFLFMCLS GITASLCGGK LTEGIFVGAF LSMSSTAVVL KFLMERNSIS ALHGQITDCA 300
  301 VGLLFALLPV LGGTSGVLQG VLSMAKSLAI LIAFLGALFV LSRTWVPWFL KLMTSLSSQT 360
  361 NELYQLAAVA FCLLVAWCSD KLGLSLELGS FAAGVMISTT DLAQHTLEQA RSQVEPIRNF 420
  421 FAALFLASIG MLIHMHFLWN HVDILLAAVL LVIVIKTVVV AIVVKVFGYN NKTAVLVGMS 480
  481 LAQIGEFAFV LLSRASNLHL IESKLYLLLL GTTALSLVTT PLLFKLIPAV VHLGVLLRWF 540
  541 SPDSSTEIGF KGELYHSESA KRISLMIQGS LHDS