YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6633841
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPALSPTRS HHVAVIGAGP AGLVAARELR REGHSVVVFE KQKQVGGTWI YTDEVESDPL  60
   61 SVDPTRSVVH SSVYRSLRIN GTRECTGYRD FPFVVRSGVS RDRRRFPSHG EVLAYLKDFA 120
  121 KEFGIEEMVR FETEVVKVSP AAEEGIGKWR IESTEKEKKV RRDEIYDAVV VCNGHYVEPR 180
  181 LAQIPGISSW PGKEMHSHNY RIPEPFRDKV AVLIGNSSSA EDISRDIARV AKEIESVHED 240
  241 GSVVYQNGKT ISVDIIMHCT GYKYHFPFLD TNGIVTVDDN RVGPLYKDVF PPAFAPWLSF 300
  301 IGIPWQVLPF PMFELQSKWI AGVLSGRIPL PSKEDMMIEI KTFYSTLEVQ GIPKRYTHRM 360
  361 GNTQFEYDNW LASQCGCSET EEWRKEMCLA NGVRKEAHPE TYRDEWDDHH LVSEAYQDFS 420
  421 LNYDGLLLAV GGVISSSLAL ANTMTLIAKI TKQNLRKNFN VRDQDDNRLV F

Type	Start	End	Confidence
Signal Peptide	1	26	0.74
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	425	0.97
Transmembrane Helix	426	447	0.67
Cytoplasmic	448	471	0.70