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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT25_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIGLRIFVV FVLLVAVTAE VYIVTMEGDP IISYKGGENG FEATAVESDE KIDTSSELVT  60
   61 VYARHLERKH DMILGMLFEE GSYKKLYSYK HLINGFAAHV SPEQAETLRR APGVRSVDKD 120
  121 WKVRRLTTHT PEFLGLPTDV WPTGGGFDRA GEDIVIGFVD SGIYPHHPSF ASHHRLPYGP 180
  181 LPHYKGKCEE DPHTKKSFCN RKIVGAQHFA EAAKAAGAFN PDIDYASPMD GDGHGSHTAA 240
  241 IAAGNNGIPL RMHGYEFGKA SGMAPRARIA VYKALYRLFG GFVADVVAAI DQAVHDGVDI 300
  301 LSLSVGPNSP PTTTKTTFLN PFDATLLGAV KAGVFVAQAA GNGGPFPKTL VSYSPWITTV 360
  361 AAAIDDRRYK NHLTLGNGKM LAGMGLSPPT RPHRLYTLVS ANDVLLDSSV SKYNPSDCQR 420
  421 PEVFNKKLVE GNILLCGYSF NFVVGTASIK KVVATAKHLG AAGFVLVVEN VSPGTKFDPV 480
  481 PSAIPGILIT DVSKSMDLID YYNASTSRDW TGRVKSFKAE GSIGDGLAPV LHKSAPQVAL 540
  541 FSARGPNTKD FSFQDADLLK PDILAPGYLI WAAWCPNGTD EPNYVGEGFA LISGTSMAAP 600
  601 HIAGIAALVK QKHPQWSPAA IKSALMTTST VIDRAGRLLQ AQQYSDTEAV TLVKATPFDY 660
  661 GSGHVNPSAA LDPGLIFDAG YEDYLGFLCT TPGISAHEIR NYTNTACNYD MKHPSNFNAP 720
  721 SIAVSHLVGT QTVTRKVTNV AEVEETYTIT ARMQPSIAIE VNPPAMTLRP GATRTFSVTM 780
  781 TVRSVSGVYS FGEVKLKGSR GHKVRIPVVA LGHRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle