YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10176708, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAVYGSAP LPRGFLGFLL LGGPLLGLFV YLQPILGFGS PFSPLVWPRS VTLKSLISPL  60
   61 ELISRLSALI GYGLRLSHLS ISMVLVCNFI SRTLANCNSS SASSSHQSFR LMDLVYLGFR 120
  121 YAIRLENNGI MISSLRRGGY RNFFNPLSPN PLNIESEPYL SNIFKIDIHE SKDLRSYGIM 180
  181 RPALWSSAYQ MLLNSIPLNP PGDRTHSTPL LVDDHFLLNL PGTARISTLR IFSMSPHLLW 240
  241 TVTITSSTAL FVDDVLTTRA LTGTSRLRSI GPQVSWILCR FIFAIFV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.83
Transmembrane Helix	14	35	0.89
Non-Cytoplasmic	36	73	0.69
Transmembrane Helix	74	91	0.62
Cytoplasmic	92	236	0.65
Transmembrane Helix	237	252	0.41
Non-Cytoplasmic	253	287	0.44