YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDA2_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMIKNLTRI SPNTSSIITR FRNSGSSSLS YTLASRFCTA QETQIQSPAK IPNDVDRSQY  60
   61 SGLPPTREGE KPRVVVLGSG WAGCRLMKGI DTNLYDVVCV SPRNHMVFTP LLASTCVGTL 120
  121 EFRSVAEPIS RIQPAISREP GSFFFLANCS RLDADAHEVH CETLTDGLNT LKPWKFKIAY 180
  181 DKLVIASGAE ASTFGIHGVM ENAIFLREVH HAQEIRRKLL LNLMLSDTPG ISKEEKRRLL 240
  241 HCVVVGGGPT GVEFSGELSD FIMKDVRQRY AHVKDDIHVT LIEARDILSS FDDRLRRYAI 300
  301 KQLNKSGVRF VRGIVKDVQS QKLILDDGTE VPYGLLVWST GVGPSPFVRS LGLPKDPTGR 360
  361 IGIDEWMRVP SVQDVFAIGD CSGYLETTGK PTLPALAQVA EREGKYLANL LNAIGKGNGG 420
  421 RANSAKEIEL GVPFVYKHLG SMATIGRYKA LVDLRESKDA KGISMTGFVS WFIWRSAYLT 480
  481 RVISWRNRFY VAINWFTTFV FGRDISRI

Type	Start	End	Confidence
Signal Peptide	1	40	0.60
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	508	0.97