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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LPA1_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVATAPSLN RHFPRRISNL YSRVKQRRPW LPPGDATLFN SRRNWDSHLF VYASSSSSPS  60
   61 SSPPSPNSPT DDLTAELCVN TGLDLFKRGR VKDALVQFET ALSLAPNPIE SQAAYYNKAC 120
  121 CHAYRGEGKK AVDCLRIALR DYNLKFATIL NDPDLASFRA LPEFKELQEE ARLGGEDIGD 180
  181 NFRRDLKLIS EVRAPFRGVR KFFYFAFAAA AGISMFFTVP RLVQAIRGGD GAPNLLETTG 240
  241 NAAINIGGIV VMVSLFLWEN KKEEEQMVQI TRDETLSRLP LRLSTNRVVE LVQLRDTVRP 300
  301 VILAGKKETV TLAMQKADRF RTELLRRGVL LVPVVWGERK TPEIEKKGFG ASSKAATSLP 360
  361 SIGEDFDTRA QSVVAQSKLK GEIRFKAETV SPGEWERWIR DQQISEGVNP GDDVYIILRL 420
  421 DGRVRRSGRG MPDWAEISKE LPPMDDVLSK LER

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle