YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIPL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGYYSLSPI SVLHRIKDSF HFAVSALLAN LFSALFTFFF ALVGTLLGAL TGALIGQETE  60
   61 SGFIRGAAVG AISGAVFSIE VFESSLLLWQ SDESGIGCLL YLIDVIASLL SGRLVRERIG 120
  121 PAMLSAVQSQ MGAVESQFQD HTDIFDTAIS KGLTGDSLNR IPKVRITDTS PEIVSCSVCL 180
  181 QDFQVGETVR SLPHCHHMFH LPCIDKWLRR HASCPLCRRH L

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.68
Transmembrane Helix	21	54	0.72
Cytoplasmic	55	61	0.62
Transmembrane Helix	62	82	0.81
Non-Cytoplasmic	83	94	0.65
Transmembrane Helix	95	115	0.74
Cytoplasmic	116	221	0.81