YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	INT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.96
Transmembrane Helix	29	53	0.85
Non-Cytoplasmic	54	69	0.86
Transmembrane Helix	70	89	0.96
Cytoplasmic	90	98	0.84
Transmembrane Helix	99	118	0.95
Non-Cytoplasmic	119	122	0.71
Transmembrane Helix	123	144	0.90
Cytoplasmic	145	155	0.81
Transmembrane Helix	156	176	0.91
Non-Cytoplasmic	177	184	0.75
Transmembrane Helix	185	206	0.90
Cytoplasmic	207	272	0.97
Transmembrane Helix	273	292	0.77
Non-Cytoplasmic	293	313	0.72
Transmembrane Helix	314	336	0.91
Cytoplasmic	337	343	0.85
Transmembrane Helix	344	363	0.95
Non-Cytoplasmic	364	455	0.89
Transmembrane Helix	456	481	0.83
Cytoplasmic	482	489	0.77
Transmembrane Helix	490	510	0.82
Non-Cytoplasmic	511	522	0.66
Transmembrane Helix	523	544	0.91
Cytoplasmic	545	580	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEEASKSEQ INITEVWTTT WETPYIMRLA LSAGIGGLLF GYNTGVIAGA LLYIKEEFGE  60
   61 VDNKTWLQEI IVSMTVAGAI VGAAIGGWYN DKFGRRMSVL IADVLFLLGA LVMVIAHAPW 120
  121 VIILGRLLVG FGVGMASMTS PLYISEMSPA RIRGALVSTN GLLITGGQFL SYLINLAFVH 180
  181 TPGTWRWMLG VSAIPAIIQF CLMLTLPESP RWLYRNDRKA ESRDILERIY PAEMVEAEIA 240
  241 ALKESVRAET ADEDIIGHTF SDKLRGALSN PVVRHGLAAG ITVQVAQQFV GINTVMYYSP 300
  301 TILQFAGYAS NKTAMALALI TSGLNAVGSV VSMMFVDRYG RRKLMIISMF GIITCLVILA 360
  361 AVFNEASNHA PKIDKRDSRN FAKNATCPAF APFTASRSPP SNWNCMKCLQ YDCGFCSNGA 420
  421 QEYAPGACIV QSADMKALCH SKGRTFFKDG CPSKFGYLAI VFLGLYIIVY APGMGTVPWI 480
  481 VNSEIYPLRY RGLAGGIAAV SNWMSNLVVS ETFLTLTNAV GSSGTFLLFA GSSAVGLFFI 540
  541 WLLVPETKGL QFEEVEKLLE GGFRPSLLRP TTKENQVETP