YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11994472, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	112	0.95
Transmembrane Helix	113	135	0.75
Non-Cytoplasmic	136	143	0.54
Transmembrane Helix	144	178	0.64
Cytoplasmic	179	199	0.49
Transmembrane Helix	200	217	0.61
Non-Cytoplasmic	218	237	0.82
Transmembrane Helix	238	266	0.73
Cytoplasmic	267	277	0.83
Transmembrane Helix	278	297	0.92
Non-Cytoplasmic	298	318	0.86
Transmembrane Helix	319	338	0.90
Cytoplasmic	339	359	0.88
Transmembrane Helix	360	379	0.92
Non-Cytoplasmic	380	385	0.72
Transmembrane Helix	386	405	0.89
Cytoplasmic	406	425	0.85
Transmembrane Helix	426	446	0.90
Non-Cytoplasmic	447	461	0.82
Transmembrane Helix	462	485	0.65
Cytoplasmic	486	497	0.58
Transmembrane Helix	498	523	0.87
Non-Cytoplasmic	524	537	0.57
Transmembrane Helix	538	561	0.82
Cytoplasmic	562	576	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFPIGSHF APPHQLTKRH VIATSSPISI STRLPQNVSF SKVSGVTGST RLSKHGVLVR  60
   61 AEDKIRSSSS PSSLDEPIDE DLMDSSGLCD PLCSVDEPSS SYFEANYQPK TDIIKALAIL 120
  121 AAALTGTAAI NHSWVAANQD VAMALLFGIG YAGIIFEESL AFNKSGIGLL MAVSLWVVRS 180
  181 IGAPSTEIAV LDLQHATAEV SEIVFFLLGA MTIVEIVDAH QGFKLVTDNI TTRKPKTLLW 240
  241 VVGFVTFFLS SILDNLTSTI VMVSLIRKLV PQSEYRKLLG GVVVIAANAG GAWTPIGDVT 300
  301 TTMLWIHGQI STLPTMKDLF LPSVVSLAVP LALMSLTSEV NGKEQDPKDV LASEKMAPRG 360
  361 KLVFGVGLGA LVFVPVFKAL TGLPPYMGIL LGLGVLWILT DAIHYGESER QKLKVPQALS 420
  421 RIDTQGALFF LGILLSVSSL EAAGILREIA NYLDANIPNV ELIASAIGVV SAIIDNVPLV 480
  481 AATMGMYDLT SFPQDSEFWQ LIAFCAGTGG SMLVIGSAAG VAFMGMEKVD FFWYFRKVSG 540
  541 FAFAGYAAGI AAYLAVHNLH FEIPTTVAQI PFLTGS