YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P24D8_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLCRSSILL LIIALLSPRT LSMRYELKSS KTKCIGEEIH ENAMSIGKYF IVNPNEDNHP  60
   61 LPDSHKIIVK VMPPQGKNLH EADKVEAGQF SFTAYENGSY VACITAIDYK PETTLTIDFD 120
  121 WKTGVHSKEW TNVAKKSQVD MMEYQVKTLM DTVISIHEEM YYLREREEEM QELNRSTNSK 180
  181 MAWLSFGSLV VCLSVAGLQF WHLKTFFEKK KLI

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	180	0.99
Transmembrane Helix	181	203	0.92
Cytoplasmic	204	213	0.96