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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|8810459, gi|2...
Protein type: Globular with Signal Peptide
Type Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVMSRRVLP ACGNLCFFCP SLRARSRHPV KRYKKMLAEI FPRNQEAEPN DRKIGKLCEY  60
   61 ASRNPLRIPK ITEYLEQKCY KELRNGNIGS VKVVLCIYKK LLSSCKEQMP LFSCSLLSIV 120
  121 RTLLEQTKEE EVQILGCNTL VDFISLQTVN SHMFNLEGLI PKLCQLAQEM GDDERSLQLR 180
  181 SAGMQALAFM VSFIGEHSQL SMDLDMIISV ILENYMDLEK GQEDTKEVDQ ISDTKIPNMT 240
  241 KKVSFKPNPV TDYKLENMDI SKSPSYWSMV CLCNIAKLAK ETTTVRRVLE PLLTAFDSGD 300
  301 YWSPQKGVAS SVLLFLQSRL EESGENCHVL VSSLIKHLDH KNVIKQQGLQ INMVNVATCL 360
  361 ALHAKQQASG AMTAVIADLI KHLRKCLQNA AESDVSVDKT KQNSDLQHAL ENCIAELSNK 420
  421 VGDAGPILDM FAVVLETIST NVVLSRTTAS AILRAAHIVS VVPNVSYHKK VFPDALFHQL 480
  481 LLAMSHADCT TRVEAHNIFS VVLLGTLRLP WSDQHKETSE AVSGSLSVDG ICTVRNQEEE 540
  541 KEKVEKSLNS ELCKDVNHIS RPSVSGQTSQ QLSCQSLDSL KDLDDGIKSL CSLRLSSHQV 600
  601 NMLLSSLWIQ ATSTDNTPEN FEAMASTYQI TLLFSLAKRS NHMALVQCFQ LAFSLRNLSL 660
  661 NQDDFWYNVE GGMQHSRRRS IFTFASYMLI FGAKISNILE LVPIIKESLT AQMVDPYLVL 720
  721 EGDIRLRAVC SGFPQEETYG SDKDDSAALN SSVIVTDDRR LKEIVITHFT SKLQTLSEEE 780
  781 QLNLRKEIQS DFSLDDAHSL GGQLFTDTPG PSSPLNQTEL PAFEEVELSD IAAFEGISPG 840
  841 ASGSQSGHRT SLSTNTNPVD VLSVNELLES VSETARQVAS LPVSSIPVPY DQMMNQCEAL 900
  901 VTGKQQKMSV LRSFKPQATK AITSEDNEKD EQYLLKETEE AGEDDEKAII VADVQPQGQL 960
  961 GFFSQEVPQN SFRLPPSSPY DKFLKAAGVK NCGRVWSVNV LCLEVDCSLP VTKTTDSCPT1020
 1021 EDAIRALLES LVDPLLPSKP TDDLPSTSIR ESVAKQVHAV VLLYNYYHRK DNPHLECLSF1080
 1081 ESFRSLATVM KPALLQHLKE DGGVSGQTVL LEKVIVDACS LSMSLDASSD LFILNKCPIR1140
 1141 RVAVLLVDSE KKSCYLQHSS ITQGVWSLLE KPIEKEKAAR ENQKEEGVFQ KVAFAVVKEA1200
 1201 TGVNHKDIVI LERHLVCSLS EEKTAVRFYI MKCTSQDKFS GENPVEEVLS CMQGPLFEKS1260
 1261 FSDWTMNSIV EYFHVLPYAT LIEDWFSRRG DTEFVIEKEP EAVCDDIESN KVDATKESEV1320
 1321 SDIFERREKA ALKRRYEIKA KKVAALLSHP GARGKATTRL QNRYLKGSMS GAKEPNVHSE1380
 1381 TVVALKAKNV GNEMSPCKDN YSNGEKGGFE VASDPKELKE RGLQRKKAVP DRLNSIHKLN1440
 1441 STPASAHNSN PNLEELQTSL LSKATSLSET ALKVLLCKRD KLTRQQRNIE DEIAKCDKCI1500
 1501 QNIKGDWELQ LETVLECCNE TYPRRNLQES LDKSACQSNK RLKLSETLPS TKSLCQRLDD1560
 1561 ICLMNNWVLP NYRVAPSDGG YEAEVRITGN HVACTIHGEE KSDAEEARES AAACLLTKLQ1620
 1621 HDTAANLS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle