YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5454204
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPALSPTRS HHVAVIGAGP AGLVAARELR REGHSVVVFE KQKQVGGTWI YTDEVESDPL  60
   61 SVDPTRSVVH SSVYRSLRIN GTRECTGYRD FPFVVRSGVS RDPRRFPSHG EVLAYLKDFA 120
  121 KEFGIEEMVR FETEVVKVSP AAEEGIGKWR IESTEKEKKV RRDEIYDAVV VCNGHYVEPR 180
  181 LAQIPGISSW PGKEMHSHNY RIPEPFRDKV LVFIDDNVVV LIGNSSSAED ISRDIARVAK 240
  241 EVHVACRSNP ADTFIKQTGY NNLWTHSMIE SVHEDGSVVY QNGKTISVDI IMHCTGYKYH 300
  301 FPFLDTNGIV TVDDNRVGPL YKDVFPPAFA PWLSFIGIPW QVLPFPMFEL QSKWIAGVLS 360
  361 GRIPLPSKED MMIEIKTFYS TLEVQGIPKR YTHRMGNTQF EYYNWLASQC GCSETEEWRK 420
  421 EMCLANGVRK EAHPETYRDE WDDHHLVSEA YQDFSLYS

Type	Start	End	Confidence
Signal Peptide	1	26	0.76
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	458	0.97