YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254972456, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.74
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	60	0.93
Transmembrane Helix	61	83	0.94
Cytoplasmic	84	92	0.86
Transmembrane Helix	93	114	0.91
Non-Cytoplasmic	115	134	0.89
Transmembrane Helix	135	157	0.86
Cytoplasmic	158	170	0.93
Transmembrane Helix	171	192	0.94
Non-Cytoplasmic	193	233	0.97
Transmembrane Helix	234	257	0.93
Cytoplasmic	258	276	0.95
Transmembrane Helix	277	299	0.93
Non-Cytoplasmic	300	314	0.86
Transmembrane Helix	315	337	0.83
Cytoplasmic	338	389	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSESYRIL LFLACVIFAS AQPGKNGRMM IVIQDDAGHI FVDQITRETL QSSLTTVFMP  60
   61 IIYIIVFVVG LPTNAMAIYV LLFRSKKVHP AAIYMGNLAL ADLMFVIWTP LKIAYHLKGN 120
  121 NWTYGEEMCK VSVGFFYGNM YCSILFITCL SVQRYWVCAH PLTQQRKDNR LAIIISVCVW 180
  181 VFIGVSTTPL YLYNQTAQLQ DLNITTCHDV NIITKKSFDD RNAFLDVQEP YYYFMVMAGL 240
  241 VFFVPMVVII VAYVLLLRSL GNSSVKGSAG KSRKRAVILI VTVLITFLVC FIPSNVMLVV 300
  301 HYSLMRNNSF NASYGFYLTA LCIASLNSCL DPFIYYYVSD DFREEVKNTL QCRSSRTVER 360
  361 MRVSFSSMKY SKRTNTYTSS SGNTETSTC