YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148922928, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHAYTVFCPV LLIWSCHIKK SWSNMTEHQM GEKATTEYDY TTGTVDYDIY EQSCNKTNNR  60
   61 TFRAWFLPTI YTIICLLALM GNFLVILTYL YFKRLKTMTD VYLFNLAMAD LLFAISLPFW 120
  121 AASFMSTWHL GLYPCKAMFT IYKVSFFSGM FLLTCISIDR YFSITKAVSA HRCRSSAVYY 180
  181 GQVSSLVTWV IAIVFSVPDM VFAVINSRGT CSANVNYQDY YVKMVISQMV LGFIIPAVVM 240
  241 GFCYICIIKT LMQAKNFERN KAFKVIIAVV VVFVFSQLPY NVVMGVSVQQ TTDCAKDNTR 300
  301 LFALDVTMAV AFLRCCVNPF LYAFIGVKFR NDLLKLLKDL GCLRTSHLMY THCGRRRSSV 360
  361 GLDTETTTTF SP

Type	Start	End	Confidence
Non-Cytoplasmic	1	68	0.95
Transmembrane Helix	69	92	0.92
Cytoplasmic	93	100	0.95
Transmembrane Helix	101	122	0.91
Non-Cytoplasmic	123	138	0.84
Transmembrane Helix	139	162	0.84
Cytoplasmic	163	177	0.90
Transmembrane Helix	178	197	0.92
Non-Cytoplasmic	198	225	0.90
Transmembrane Helix	226	248	0.89
Cytoplasmic	249	261	0.86
Transmembrane Helix	262	280	0.93
Non-Cytoplasmic	281	307	0.84
Transmembrane Helix	308	326	0.81
Cytoplasmic	327	372	0.85