YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GP83A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTSANFTQ NDSNVCTNLY NHRGWAQYFL PAMYSLICIV GLLGNVLALH VIWPNLKKIN  60
   61 STTLYSANLV VSDILFSLAL PLRVVYYARG FDWPMGEGLC KAVALLFYIN MYAGVNFMTC 120
  121 LSVDRFIAVV LPLRFSRFRK VQKVRYICGV VWVVVLMQTL PLLSMPMTNI EQSGHITCME 180
  181 YPNFEKIDNL PVMLIGAVVL GFGIPVITIL VCYTALCLKL RHLAKSNKLT EKSGRSSKAI 240
  241 GVICTVILVF VVCYSPYHVD LLQYMIKKLR YDPDCSELHK FQISLHITVC FMNLNSCLDP 300
  301 FIYFFACKGY KKKVLKLLKK QVSMSFSSVV RTSPEGSSKD VFGNDKIQMN SRSFQKERSS 360
  361 VLLNSLEQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.94
Transmembrane Helix	30	53	0.91
Cytoplasmic	54	63	0.85
Transmembrane Helix	64	85	0.89
Non-Cytoplasmic	86	103	0.86
Transmembrane Helix	104	127	0.79
Cytoplasmic	128	143	0.84
Transmembrane Helix	144	165	0.90
Non-Cytoplasmic	166	193	0.94
Transmembrane Helix	194	217	0.92
Cytoplasmic	218	237	0.91
Transmembrane Helix	238	258	0.92
Non-Cytoplasmic	259	284	0.94
Transmembrane Helix	285	307	0.64
Cytoplasmic	308	368	0.71