YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25518365, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAEKNPIQS VMAWIRRQPP KVKAFLGVVT AMTVLVLLRV IVHEHDNLFV ASEAVHAVGI  60
   61 AVLIYKLTKE KTCAGISLKT QELTALFLAV RLYCSFVMEF DLHTFLDSAT LVTTLWVVYM 120
  121 IRFKLRPTYM EDKDNFAIYF VVIPCAVLSF FIHPSTRHHI INRISWAFCV YLEAVSVLPQ 180
  181 LRVMQNTKIV EPFTAHYVFA LGIARFLSCA HWILQVLDTR GRLLTALGSG LWPVMVLISE 240
  241 IVQTFILADF CYYYVQSSFF DSRLVWCKKL CENGVLELVE RFND

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	48	0.88
Transmembrane Helix	49	68	0.60
Cytoplasmic	69	77	0.55
Transmembrane Helix	78	95	0.48
Non-Cytoplasmic	96	102	0.64
Transmembrane Helix	103	123	0.80
Cytoplasmic	124	135	0.76
Transmembrane Helix	136	155	0.93
Non-Cytoplasmic	156	163	0.66
Transmembrane Helix	164	183	0.61
Cytoplasmic	184	192	0.51
Transmembrane Helix	193	214	0.91
Non-Cytoplasmic	215	229	0.45
Transmembrane Helix	230	253	0.73
Cytoplasmic	254	284	0.52