YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148726475
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIELTMADNL NCSAGNCSSA HDAFGLSDGH FALVKAAVLG CVFVLATCSN LFLLHALWKR  60
   61 RKRHTRTQLF LLHLCLADLV VAFFQVLPQL SMEITHRFRG SDLVCRSVKY LQVVGMFASS 120
  121 YMIVAMTIDR YHAVCKPMVS FFRGSFRRYV SISAAWLISL AFSAPQIFIF SLQEVEKDVF 180
  181 DCWATFIEPW GGRIYITWIT LSVFVLPAVI LMFCQIKICA GIYFNMKRKA LQGSAGDGRS 240
  241 STKGISSAML KTVKMTFIII LVYTLCWSPF FVVQLWSAWS PSSAPTQGPV FVTIMLLASL 300
  301 NSCTNPWIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.95
Transmembrane Helix	33	54	0.93
Cytoplasmic	55	68	0.83
Transmembrane Helix	69	88	0.95
Non-Cytoplasmic	89	109	0.89
Transmembrane Helix	110	128	0.93
Cytoplasmic	129	148	0.83
Transmembrane Helix	149	170	0.90
Non-Cytoplasmic	171	193	0.96
Transmembrane Helix	194	219	0.87
Cytoplasmic	220	254	0.93
Transmembrane Helix	255	276	0.88
Non-Cytoplasmic	277	285	0.78
Transmembrane Helix	286	308	0.77
Cytoplasmic	309	309	0.91