YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148726562, gi...
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHSLELLLD LEPMFREVMA VLKMPRFKKY HLRLMITCFS TLLLMTYWEK IDNCVVTHVM  60
   61 SFSYRYLINS FKFINSSFIV NPEDAIKYNH RYLINHQTTC DNKDILLLLF VKSSSENFER 120
  121 RQAIRSTWGN ETFIENTLGV NVKVLFALGL HPIPEERGKL KEDLMFEDQK YHDLIQQDFM 180
  181 DTFHNLTLKL LLQLGWKETY CHHAQFLMSA DDDVFVHTPN LILYLQGFGQ SNTRDLWIGR 240
  241 VHRGSPPNRD KESKYYVSRD LYPWLSYPDY TPGSGYVLSR DVVSRIYQAS LTINASFHID 300
  301 DVFLGICAKM MDVSPTDHAF FSGEGKAPHH HCIYSQMMTS HGHVSDIHEM WRHARNAEDV 360
  361 LISSGLFRRL YCTAVKVRLL CVPFFSNSYP CKAAFFEEDT Y

Type	Start	End	Confidence
Cytoplasmic	1	29	0.52
Transmembrane Helix	30	48	0.50
Non-Cytoplasmic	49	401	0.98