YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148726377
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SITKAGTTET KADPGADLSL SPVMMAMERE RLIMTQSQYK CLELLSRDGS HNKTGSFCSR  60
   61 FWDGLLCWDE TPAGTFASQN CPDYPSFDPL EKVTKYCDES GNWVHSASIN KTWSHCLTFS 120
  121 KDKIKTLPVH GFSETETELD PTAESKVSPV VIQKAEERKM IIDGQYKCFE KMNRDQPYNK 180
  181 SGLYCNRTWD GWLCWDDTPA GTFTSQYCPN YFADFDSTEK VTKYCDETGN WFRHPETNRT 240
  241 WSNYTLCIAH TKDKLKMAYI LYYMAIVGHA LSIVSLLISL AIFFYFRSLS CQRITLHKNL 300
  301 FCSYVLNSAF TIVNLITVVN NPKVVQRNPI SCKVLHFFHM YMLGCNYFWM LCEGIYLHTL 360
  361 IVVAVFAEEQ HLHWYYLLGW GFPLVPASIH AVARKKYFDD NCWMSVETHL LYVVHGPIMA 420
  421 ALLVNLFFLL NIVRVLVTKL RDTHRAESNM YMKAVRATLI LVPLLGIQFV IIPWRPENRL 480
  481 AGEIYDYIMH ILMHYQGLLV ATIFCFFNGE VQGALKRQWM QYKAQWGQRR REHCSMRSTS 540
  541 YTATSITEVP AFMFHHDCNS EHLNGKQTED SELVALKTGE TYA

Type	Start	End	Confidence
Non-Cytoplasmic	1	259	0.51
Transmembrane Helix	260	286	0.85
Cytoplasmic	287	299	0.43
Transmembrane Helix	300	319	0.59
Non-Cytoplasmic	320	344	0.78
Transmembrane Helix	345	366	0.87
Cytoplasmic	367	373	0.70
Transmembrane Helix	374	393	0.82
Non-Cytoplasmic	394	412	0.92
Transmembrane Helix	413	433	0.94
Cytoplasmic	434	453	0.86
Transmembrane Helix	454	472	0.96
Non-Cytoplasmic	473	490	0.87
Transmembrane Helix	491	511	0.89
Cytoplasmic	512	583	0.91