YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|153791419, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVQHTYIY IQQTKLHSLH SVHSLQEYRF LLFSMQLWAT VSVLGLLITG SWAQGVQTTV  60
   61 NLAECDSPEA EAAALAAQDY LNAQHTHGYK YILNRIEGNK VISRPNHEDT YLMELDFLET 120
  121 TCHVLDPTPV SLCPVRQQRS TAVEADCDFA VTKGLSIVAF KCKTEIETDD DCLGCPHLLP 180
  181 LNDTDGLQLI EASLDSFNQN NTLKTKFALF EIGRMTSQIV SGVPQYFAEY AIIGTNCSSY 240
  241 VDDSCIPQNH TVAIHGLCLA EGSAGLIDVD CKIFNPTQTV HTESNNATMR VQQLLHAHTF 300
  301 GPQHNPTVHG LRHHKLTALH DPAQSGLISA ESTESAEVVA VLPQEAHVVK REVAAPEKPA 360
  361 VDAKVEKTPI LVDPIALSCP GKKKHF

Type	Start	End	Confidence
Cytoplasmic	1	29	0.83
Transmembrane Helix	30	53	0.75
Non-Cytoplasmic	54	386	0.98