YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148725906
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.97
Transmembrane Helix	72	91	0.92
Non-Cytoplasmic	92	100	0.84
Transmembrane Helix	101	123	0.90
Cytoplasmic	124	141	0.88
Transmembrane Helix	142	164	0.85
Non-Cytoplasmic	165	227	0.90
Transmembrane Helix	228	249	0.88
Cytoplasmic	250	256	0.81
Transmembrane Helix	257	277	0.91
Non-Cytoplasmic	278	303	0.88
Transmembrane Helix	304	325	0.91
Cytoplasmic	326	335	0.80
Transmembrane Helix	336	358	0.90
Non-Cytoplasmic	359	464	0.91
Transmembrane Helix	465	487	0.88
Cytoplasmic	488	499	0.84
Transmembrane Helix	500	518	0.96
Non-Cytoplasmic	519	532	0.85
Transmembrane Helix	533	554	0.94
Cytoplasmic	555	574	0.95
Transmembrane Helix	575	598	0.92
Non-Cytoplasmic	599	619	0.92
Transmembrane Helix	620	642	0.92
Cytoplasmic	643	732	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSSKVTQR EHSNEPVTES VADLLALEAP MDYKSSQMSM NMTGGSAPPI GKPDISPDLE  60
   61 DGRPAWNSKL QYILAQVGFS VGLGNVWRFP YLCQKNGGGA YLVPYFILLI LIGIPLFFLE 120
  121 LAVGQRIRRG SIGVWNYVCP RLGGIGASSL MVCGFVGLYY NVIIGWSIFY FFQSFQYPLP 180
  181 WSDCPIRKNG SQAIVEPECE KSSATTYFWY RETLNITSTI ADSGGLNWRM TLSLLAAWII 240
  241 VCLAVIKGIQ SSGKVMYFSS LFPYVVLFCF LVRGLFLKGA VDGIAHMFTP KLEIMLEPQV 300
  301 WREAATQVFF ALGLGFGGVI AFSSYNKRDN NCHFDAVLVS VINFLTSILA TLVVFAVLGF 360
  361 KANIMNEKCV VENAEKILGY LNSNVLSHDL IPPHVNFSHL TTSDYAEMYG VIKIVKEDSF 420
  421 AQLGLEQCLL EDELNKAGAV QGTGLAFIAF TEAMTHFPAS PFWSVMFFFM LINLGLGSMI 480
  481 GTMTGITTPI LDTFKIRKEY LTVGCCIVAF LCGLLFVQRS GNYFVTMFDD YSAGLPLTIV 540
  541 VILENVSVAW IYGTKRFMQD LEDMLGFRPY SVYFYLWKYV SPVCLIILIS ASVVEMAISP 600
  601 LGYNAWVQDL AMERFQSYPP WAIVMCFALI IVAMLPLPLV FIARHFNWLP DGSNKLSVSY 660
  661 RKSLAKEAST LEDETRFILG KNPSEAPSPM PSHRAYLGPG STSPVELITN STSISGYGSG 720
  721 YQTNPAPPKS ES