YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169153901, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	588	0.90
Transmembrane Helix	589	610	0.87
Cytoplasmic	611	621	0.66
Transmembrane Helix	622	643	0.87
Non-Cytoplasmic	644	673	0.70
Transmembrane Helix	674	695	0.89
Cytoplasmic	696	704	0.56
Transmembrane Helix	705	719	0.42
Non-Cytoplasmic	720	804	0.52
Transmembrane Helix	805	823	0.48
Cytoplasmic	824	842	0.85
Transmembrane Helix	843	864	0.90
Non-Cytoplasmic	865	894	0.93
Transmembrane Helix	895	914	0.96
Cytoplasmic	915	934	0.87
Transmembrane Helix	935	959	0.86
Non-Cytoplasmic	960	994	0.84
Transmembrane Helix	995	1014	0.71
Cytoplasmic	1015	1020	0.47
Transmembrane Helix	1021	1040	0.84
Non-Cytoplasmic	1041	1069	0.55
Transmembrane Helix	1070	1103	0.74
Cytoplasmic	1104	1196	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGKRVEDE AVLDRGASLL KPLCDQEEVE GHHTIYIGVH VPKSYRRRRR HRRRTSHKDR  60
   61 KEKVSENTSD RSDAENNEEA SNSILKPLSK RLPKSRRFTL MLFYLVPGNK SPLFEDRMDA 120
  121 SDNTFENNNV EKMESSEDVD ADSEPSVVKI PPPPSEKLEI RPNGISEDGK PEICSTVPPP 180
  181 LTRSIFPVTV SPAAERIRFI LGEDDDSPAP PQLFTELDEL LSVDGQEMEW KETARWIKFE 240
  241 EKVEKGGERW SKPHVATLSL HSLFELRTCI EKGTIMLDLE ASTLPGVVEM ITDSQIESGL 300
  301 LKADLKEKVM YTLLRKHRHQ TKKSNLRSLA DIGKTVSSAS RLFSTPDNGN TGSPTTAHRN 360
  361 LTSSSLNDIS DKPEKDQLKN KFMKKLPRDA EASNVLVGEV DFLDSPFVAF VRLQQAVMLG 420
  421 ALTEVPVPTR FLFILLGPKG KAKSYHEIGR AIATLMSDEV FHEIAYKAKD RQDLLAGIDE 480
  481 FLDEVIVLPP GEWDPAIRIE PPKSLPSSDK RCLDLFVMLS RKNMYAGGDS TQMNGDTPHS 540
  541 GGHGGGGHAV GDELKKTGKF CGGLILDVKR KVPFFFSDFY DSLHIQSLSA ILFIYLGTVT 600
  601 NAITFGGLLG DATENMQGVL ESFLGTAVTG AVFCLLAGQP LIILSSTGPV LVFERLLFNF 660
  661 SRENDFDYLE FRLWIGLWSA FFCLVLVATD ASFLVQYFTR FTEEGFSSLI SFIFIYDAFK 720
  721 KMLKLAHYYP INSDFKIDYV TQYDCMCMAP TDANSSDVYT DPLDSTFVWT VNYTTDPRMN 780
  781 ATWSSLSKKE CLKYGGELVG KACEFVPDIT LMSFILFFGT YTCSMCLKKF KTSPFFPTTV 840
  841 RKLISDFAII LAILIFCGVD ALVGVETPKL IVPSEFKPTS PNRGWFVPPF GGNPWWVYLG 900
  901 ASVPALLVTI LLFMDQQITA VIVNRKEHKL KKGAGYHLDL FWVAVLLAVC SFMGLPWYVA 960
  961 ATVISIAHID SLKMETETSA PGEQPKFLGV REQRVTGVMV FILTGISVFM SPVLKFIPMP1020
 1021 VLYGVFLYMG VASLNGVQFM DRLKLLLMPA KHQPDLIYLR HVPLRKVHLF TFVQLLCLAL1080
 1081 LWVLKSTVAA IIFPVMILAL VAVRKALDYI FSQHDLSFLD DVIPEKDKKK KEDEKKKKKK1140
 1141 KQGSIDSDME DSDYPYNENV PSIKIPMDMM EQEPFLGDKA SDREKSTSIL DRYSSC