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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|148725836
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYAGPACQF RNPCFQSPCR NGGVCRLITS ANKVDFVCNC SLGYTDRLCL TPTNNVCLGA  60
   61 PCRNGGTCEL TSIHNYRCKC PPGWSGKTCQ QADPCASNPC ANGGQCSPFD SDFLCHCTPY 120
  121 FSGQTCKQDV NECAQIPSPC KNGGVCENGV GTYHCNCPAE YTGKHCESLY QPCNPSPCLH 180
  181 GGTCVQKGET SYECSCLPGF SGQNCEENID DCPDHRCLNG GTCVDGVNTY NCQCKPEWTG 240
  241 QFCTEDVNEC DLMPNSCQNG GTCLNTQGGY NCVCVNGWTG DDCSENIDDC ADAACHTGAT 300
  301 CHDRVASFLC ECPHGRTGLL CHLDDACISN PCQKGSNCDT NPVNGKAICT CPLGYVGPAC 360
  361 DQDVDECSLG ANPCEHAGKC INTKGSFQCK CLQGYVGARC ELDINECLST PCQNDATCLD 420
  421 QIGGFHCICM PGYEGVFCQI NTDECASMPC LNNGKCIDKI NNYQCECPTG FSGSQCQFDI 480
  481 DECASTPCKN GAKCMDGPNM YTCQCTEGYT GQHCETDVDE CLSNPCHYGT CKDGLASFTC 540
  541 VCRAGFMGRL CEININECLS QPCQNGGTCQ DRENAYLCVC PKGTAGANCE INLDDCQSNP 600
  601 CDFGRCIDKI NGYECACEPG YTGKMCNINI DECAINPCHN GGTCVDGVNG FTCLCREGYH 660
  661 DTTCQSQLNE CLSNPCIHGH CEDKVNGYNC ICDSGWSGVN CDINNNECES NPCMNGGTCK 720
  721 DMTSGYVCTC RAGFSGPNCQ TNINECASNP CLNQGTCIDD VAGYKCNCLL PYTGENCETL 780
  781 LAPCGSKPCK NGGVCKESED YESFSCVCPA GWQGQTCEVD INECVKNPCR NDAICQNSIG 840
  841 SYKCSCKAGY TGRNCETDID DCKPNPCSNG GFCKDAVNAF ACTCLPGFRG GRCEEDINEC 900
  901 ESNPCKNGAN CTDCVNSYTC TCPPGFSGIH CENNTPDCTE SSCFNGGTCV DGINSFTCLC 960
  961 PKGFTGNYCQ HDINECDSRP CMNGGTCQDS YGTYKCTCPQ GYHGLNCQEL VNWCKPSPCK1020
 1021 NGGICRQSGT RYSCQCQTGW TGLYCDVPSV SCEVAAKQQG VDVVRLCRNS GQCLDAGNTH1080
 1081 YCHCQAGYTG SYCEEQVDEC IPNPCQNGAT CTDYLGGYSC ECVPGYHGVN CSDEINECLS1140
 1141 QPCQNGGTCI DLINTYKCSC PRGTQGVHCE INIDDCTPFT DPITHEPKCF NQGRCVDRVG1200
 1201 GYHCICPPGY VGERCEGDVN ECLSNPCGTH SCIQLKNNYR CECRTGYTGQ HCDKVFDGCK1260
 1261 GKPCRNGGTC AVASNTPHGF ICKCPPGFTG STCEYDAHAC GSLQCKNGGT CVSGHKSPKC1320
 1321 LCTPAFTGPE CQDPSGGHCT TNPCYNGGTC EYITEEPYYH CICPTNFNGL FCHILDWSFP1380
 1381 GGTGQDITPA PKVSVSCEIE QCKVKKGNKI CDSACNNYAC DWDGGDCSLN FNDPWKNCSA1440
 1441 ALQCWRYFNN GKCDEQCHNT GCLYDGFDCQ RVEAQCNPLY DQYCKDHFAD GYCDQGCNNA1500
 1501 ECEWDGLDCA NDTPEKLAAG LLVVVVHIHP DQLRNNSFGF LRELSRVLHT NVVFRRDSKG1560
 1561 QEMIYPYYGN EQELKKHNIK RSLDGWNDAS SDVLSSMKNS IYNIVVEGGR KRRELEKIQV1620
 1621 KGSVVYLEID NRQCYQQTSE CFQSANDAAA FLGALASSGS LKMPYVIEAV TSEIDGPSPV1680
 1681 ELYPVYVVLA GLALLAFVAI GMVASRKRRR EHGQLWFPEG FKTSEPSKKK RREPVGEDSV1740
 1741 GLRPLKNCSD ISLMDDNQNE WGEEEQSDSK RFRSEEQAML DLDDQPDHRQ WTQQHLDAAD1800
 1801 LRIPSIAPTP PQGEIENDCM DVNARGPDGF TPLMIASCSG GGLETGNSEE EEDASANVIN1860
 1861 DFIYQGANLH NQTDRTGETA LHLAARYARS DAAKRLLEAS ADANIQDNMG RTPLHAAVAA1920
 1921 DAQGVFQILI RNRATDLDAR MHDGTTPLIL AARLAVEGMV EELINCHADV NAIDDFGKSA1980
 1981 LHWAAAVNNV DAAMVLLKNG ANKDMQNNKE ETPLFLAARE GSYETAKVLL EHFANREITD2040
 2041 HMDRLPRDIA QDRMHHDIVR LIDEYNLVRS PPMHSAPLCT TLSPPLCSPN GFMGNMKPSV2100
 2101 QSKKPRKPST KGIGCKDGKD MKVKKKKAQD GKGNLLDSSA VLSPVDSLES PHGYISDIAS2160
 2161 PPQMTSPFQQ SPSMSLNQLQ GMSDNHMGVS HLGIGNNQDL SHIQFDPLPP RLTHLPVAGS2220
 2221 NGSNVMNGQC EWLGRMHGSM APQNQFTAMR NASGQANLHQ SGLMTSHHNG RPATLSQMMN2280
 2281 YQSMQNTHLM QQMQQSMQPR PQQTGVQLQS QSQNFIGGDL GGPELQQSAG NSMSIHTIIP2340
 2341 QETQLLNPSS LGSSMAGTQF LTPPSQHSYT PALDANTPNH QLQVPDHHPF LTPSPGSPDQ2400
 2401 WSSSSPNSNM SDWSEGISSP PTSMQSQIGH MPEQFK

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