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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|148725657, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPMDGGMRY TPGSTDKDWD QAVTFLPASD HKKMEKKKGP GKIGIIVGLV ILAAVLALII  60
   61 GLVVWHFHFR NDLKLQKIYT GSFRITNEAF VDAYENPQSP EFQNLADKVS TQLKLMYSES 120
  121 SQLSKYYVTS RVQAFSEGSV IAYYESEFAV PAAHEAAVDQ AVSNLSEKYS SGKARKVSEQ 180
  181 QGSLVLDSVV SSALDKRLIS KARSSTRYNK HTSRFVEDII FSPGFPDSPY PSNTFVQWQL 240
  241 RGDPDHVLKL TFDTFNLEQN CSNDFLRVYD SLVALDKFIM AEKCGYYSPS DPLSFISSRN 300
  301 VMLVTLVTNE EGAYPGFRAR VSQIQAVTCG GRMIGNSGIF TSPNFPDYYP PNITCQWYIE 360
  361 VPAGKFIKLK FPKIMVSTGS ECHGDFVEVV GQSKLCGQQL NTIVTVNSNT ATVRFVSDSS 420
  421 NVDRGFSATF EDYSPSDPCQ DLFLCNNKRC VKPSMRCDGW NDCGDTSDEQ NCQCDAKMIQ 480
  481 CKNGLCKPMF WRCDGVDDCG DSTDELNCGC RADQFKCKND KCISEKQKCD GKDDCNDGSD 540
  541 EEGCARTDSC LVSTFLCGNS KCITKPNPEC DGQDDCGDNS DESNCNCGTK AYKKSRIVGG 600
  601 QDAFEGEFPW QVSLHIKNIA HVCGGSIINE RWIVTAAHCV QDDVKIKYSQ PGTWEVFLGL 660
  661 HSQKDKLTAT KRLLKQVIPH PYYNAYTYDN DIALMEMESP VTFSDTIRPV CLPTATDTFP 720
  721 AGTSVFISGW GATREGGSGA TVLQKAEVRI INSTVCNQLM GGQITSRMTC AGVLSGGVDA 780
  781 CQGDSGGPLS FPSGKRMFLA GVVSWGDGCA RRNKPGIYSN VPKFRAWIKE KTGV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle