YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148725584
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TETIHSAFRQ SFNPFERMEN SEEHFYDYPE YENSSSNFSY DDYQTICEKG DVRSFARIFL  60
   61 PAVFGLSLVI GLAGNALIVA VYAYCKQLKT MTDTFILHLA VADLLLLLTL PFWAVDAVHG 120
  121 WQLGITICKL VSGLYTINFT CSMMLLAYIS MDRYLALSVG SRNQGLGRVF QKQHCGKLCV 180
  181 VVWMAAFLLG IPDLVFSTVR ELPHKKSCLA MYPSDMALRA KASLEMVEVV IGFLLPLLVM 240
  241 LFCYTRVGRA LLKLSEDRKW KKWQYIRVLL AMVGVFLVTQ LPYNVVKFCR ALDIMYTFVT 300
  301 HCGVSKKLDW ATQITESLAL THCCLNPVVY TFVGSSFRQH VLKCAKDFGD RGRRLAHARE 360
  361 QQEVNISLNS HSHSRDTSTF SI

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.86
Transmembrane Helix	62	85	0.90
Cytoplasmic	86	93	0.85
Transmembrane Helix	94	115	0.92
Non-Cytoplasmic	116	130	0.72
Transmembrane Helix	131	152	0.83
Cytoplasmic	153	173	0.81
Transmembrane Helix	174	195	0.82
Non-Cytoplasmic	196	225	0.89
Transmembrane Helix	226	245	0.92
Cytoplasmic	246	262	0.89
Transmembrane Helix	263	283	0.88
Non-Cytoplasmic	284	382	0.72