YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148725495
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	116	0.86
Transmembrane Helix	117	135	0.76
Non-Cytoplasmic	136	142	0.77
Transmembrane Helix	143	162	0.94
Cytoplasmic	163	175	0.80
Transmembrane Helix	176	196	0.94
Non-Cytoplasmic	197	217	0.82
Transmembrane Helix	218	243	0.85
Cytoplasmic	244	254	0.83
Transmembrane Helix	255	277	0.89
Non-Cytoplasmic	278	310	0.83
Transmembrane Helix	311	334	0.83
Cytoplasmic	335	349	0.69
Transmembrane Helix	350	368	0.90
Non-Cytoplasmic	369	375	0.71
Transmembrane Helix	376	398	0.87
Cytoplasmic	399	411	0.69
Transmembrane Helix	412	430	0.88
Non-Cytoplasmic	431	615	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKSLRQRS RRGSKQDANN VNNTPTPENR ATKDDKCAED NKSSDPRNES SGKAGQVWAP  60
   61 EGSTAFKCLV SARFCAALLS NLSDCDETFN YWEPTHYLLY GTGMQTWEYS PSYAIRSYAY 120
  121 LWLHALPACF HAKILQTNKV LVFYFLRCML AFGCCVCELY FYKAVCKKFG LHVGRLLLAF 180
  181 LVLSAGMFCS SAAFLPSTFC MYSTVVAMTG WFQGRPSLAV LGVAAGAIVG WPFSALLGIP 240
  241 IAFDLLWLKK KWKSFIMWTL VALLLFLVPV VIVDSYYYGK LVIAPLNIIL YNVFTPHGPD 300
  301 LYGTEPWHYY FVNGFLNFNI VFVLALFSLP LTALMEALLQ RFNVQNLGRP YWLTLSPMYL 360
  361 WMLVFFTRPH KEERFLFPIY PLICLCGAVA LSSLQKCYHF IFQRYRLEHY TISSNWLALG 420
  421 SVLLFGVLSL SRSVALFRGY HAPLDLYPEF HRIAKDPAIH TVPEGRLVNV CVGKEWYRFP 480
  481 SSFFLPNNWH LQFIQSEFRG QLPKPYAMGP DATWIIPPDM NDQNLEETSR YVDLKQCHYL 540
  541 VDLATETEAP REPRYAANKE EWSVIADKPF LDSTRSSRIL RAFFIPFLSE QYNTYSRYVI 600
  601 LKPRRPKHTR KRPQA