YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIC55_ARATH
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ  60
   61 TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED APLGLTVYDR QIVLYKDGEG 120
  121 TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK 180
  181 TYEVKDSQGV VWVWMSTKTP PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP 240
  241 AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ 300
  301 NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF 360
  361 EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK WMDKVGHGMP YHFGHRTISL 420
  421 PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW 480
  481 KNILSATAVA LTALAILVVS RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	434	0.72
Transmembrane Helix	435	449	0.24
Cytoplasmic	450	478	0.50
Transmembrane Helix	479	499	0.77
Non-Cytoplasmic	500	504	0.60
Transmembrane Helix	505	527	0.75
Cytoplasmic	528	539	0.68