YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	54	0.84
Non-Cytoplasmic	55	68	0.73
Transmembrane Helix	69	89	0.93
Cytoplasmic	90	102	0.89
Transmembrane Helix	103	122	0.96
Non-Cytoplasmic	123	137	0.81
Transmembrane Helix	138	158	0.85
Cytoplasmic	159	178	0.89
Transmembrane Helix	179	200	0.90
Non-Cytoplasmic	201	224	0.84
Transmembrane Helix	225	245	0.91
Cytoplasmic	246	277	0.94
Transmembrane Helix	278	298	0.91
Non-Cytoplasmic	299	330	0.89
Transmembrane Helix	331	350	0.95
Cytoplasmic	351	358	0.85
Transmembrane Helix	359	378	0.92
Non-Cytoplasmic	379	401	0.86
Transmembrane Helix	402	424	0.90
Cytoplasmic	425	435	0.68
Transmembrane Helix	436	458	0.84
Non-Cytoplasmic	459	468	0.71
Transmembrane Helix	469	490	0.92
Cytoplasmic	491	491	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIQAKEDA APVDRQSSSS VVVPDEPSPL RKMISVASIA AGIQFGWALQ LSLLTPYVQL  60
   61 LGVPHKWSSF IWLCGPISGL LVQPTVGYFS DRCKSRFGRR RPFIATGALL VALAVILIGF 120
  121 AADFGHTMGD KLDEAVKIRA VGFFVVGFWI LDVANNTLQG PCRAFLGDLA AGDAKKTRTA 180
  181 NAIFSFFMAV GNVLGYAAGS YTNLHKIFPF TVTKACDIYC ANLKSCFIIS ITLLIVLTII 240
  241 ALWYVEDKQW SPNADSDNEK TPFFGEIFGA FKVMKRPMWM LLAVTALNWI AWFPFLLYDT 300
  301 DWMGREVYGG DSAGDDKMKK LYNHGIQVGS LGLMLNSIVL GVMSLVIGVI SKKIGAKRLW 360
  361 GAVNIILAVC LAMTVLVTKK AEEHRKIAGR MALPTNAIRD GALSLFAILG IPLAITFSIP 420
  421 FALASIISSS SGAGQGLSLG VLNMAIVIPQ MIVSFGVGPI DALFGGGNLP GFVVGAIAAL 480
  481 ISSVVALTVL P