YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCP53_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLQDWSIT TCLFLFFLHA SQTHCTSQSH VRNRLYRSKR GIGSSIDTSH LNAIRRLSVS  60
   61 LSLQNISGVN QQEQKERDLI ENLPGQPSVN FKQYGGYVTV NESAGRSLYY YFVEATNTKN 120
  121 SSPLVLWLNG GPGCSSLYGA FQELGPFRVH SDNKTLYTNP YSWNNVANML FLESPAGTGF 180
  181 SYTNTTTDME NPGDMKTAAD NYVFLVKWLE RFPEYKGRDF YIAGESYAGH YVQWRHGCGD 240
  241 FGDSYNVRTE DDESNGCYGM ASVV

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	264	0.99