YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.78
Transmembrane Helix	48	64	0.70
Non-Cytoplasmic	65	78	0.54
Transmembrane Helix	79	100	0.85
Cytoplasmic	101	107	0.58
Transmembrane Helix	108	130	0.91
Non-Cytoplasmic	131	141	0.60
Transmembrane Helix	142	158	0.68
Cytoplasmic	159	188	0.92
Transmembrane Helix	189	211	0.92
Non-Cytoplasmic	212	216	0.91
Transmembrane Helix	217	238	0.94
Cytoplasmic	239	326	0.99
Transmembrane Helix	327	348	0.84
Non-Cytoplasmic	349	367	0.85
Transmembrane Helix	368	388	0.92
Cytoplasmic	389	407	0.86
Transmembrane Helix	408	428	0.92
Non-Cytoplasmic	429	456	0.90
Transmembrane Helix	457	480	0.81
Cytoplasmic	481	490	0.91
Transmembrane Helix	491	513	0.92
Non-Cytoplasmic	514	533	0.91
Transmembrane Helix	534	554	0.93
Cytoplasmic	555	565	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIPEEEVAL LEDYVSDSVD HRGFPAGKSS TGGWRSAWFI IGVEVAERFA YFGIACNLIT  60
   61 YLTGPLGQST AKAAVNVNTW SGTASILPIL GAFVADAYLG RYRTIVVASL IYILGLGLLT 120
  121 LSASLIIMGL SKQRNDASAK PSIWVNTLFF CSLYLVAIGQ GGHKPCVQAF GADQFDAEDP 180
  181 KEVIARGSFF NWWFLSLSAG ISISIIVVAY VQENVNWAFG FGIPCLFMVM ALAIFLLGRK 240
  241 IYRYPKGHHE EVNSSNTFAR IGRVFVIAFK NRKLRLEHSS LELDQGLLED GQSEKRKDRL 300
  301 NFLAKAMISR EGVEPCSGRD VDDAKALVRL IPIWITYVVS TIPYAQYITF FTKQGVTVDR 360
  361 RILPGVEIPA ASLLSFVGVS ILISVPLYER VFLPIARKIT KKPFGITMLQ RIGAGMVLSV 420
  421 FNMMLAALVE SKRLKIAREH GLVDKPDVTV PMSIWWFVPQ YLLLGMIDLF SMVGTQEFFY 480
  481 DQVPTELRSI GLSLSLSAMG LSSFLSGFLI SLIDWATGKD GWFNSNLNRA HVDYFYWLLA 540
  541 AFTAIAFFAF LFISKMYVYR RLDQV