YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAQEKRRRF EQISKCDVKD RSNHTVAADL DGTLLISRSA FPYYFLVALE AGSLLRALIL  60
   61 LVSVPFVYLT YLTISETLAI NVFVFITFAG LKIRDVELVV RSVLPRFYAE DVRPDTWRIF 120
  121 NTFGKRYIIT ASPRIMVEPF VKTFLGVDKV LGTELEVSKS GRATGFTRKP GILVGQYKRD 180
  181 VVLREFGGLA SDLPDLGLGD SKTDHDFMSI CKEGYMVPRT KCEPLPRNKL LSPIIFHEGR 240
  241 LVQRPTPLVA LLTFLWLPVG FVLSIIRVYT NIPLPERIAR YNYKLTGIKL VVNGHPPPPP 300
  301 KPGQPGHLLV CNHRTVLDPV VTAVALGRKI SCVTYSISKF SELISPIKAV ALTRQREKDA 360
  361 ANIKRLLEEG DLVICPEGTT CREPFLLRFS ALFAELTDRI VPVAINTKQS MFNGTTTRGY 420
  421 KLLDPYFAFM NPRPTYEITF LKQIPAELTC KGGKSPIEVA NYIQRVLGGT LGFECTNFTR 480
  481 KDKYAMLAGT DGRVPVKKEK T

Type	Start	End	Confidence
Cytoplasmic	1	40	0.95
Transmembrane Helix	41	62	0.85
Non-Cytoplasmic	63	68	0.63
Transmembrane Helix	69	91	0.83
Cytoplasmic	92	247	0.94
Transmembrane Helix	248	269	0.89
Non-Cytoplasmic	270	501	0.95