YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSSPHHSH IVEVNVGKSD EERIIVASKV CGEAPCGFSD SKNASGDAHE RSASMRKLCI  60
   61 AVVLCLVFMS VEVVGGIKAN SLAILTDAAH LLSDVAAFAI SLFSLWAAGW EATPRQTYGF 120
  121 FRIEILGALV SIQLIWLLTG ILVYEAIIRI VTETSEVNGF LMFLVAAFGL VVNIIMAVLL 180
  181 GHDHGHSHGH GHGHGHDHHN HSHGVTVTTH HHHHDHEHGH SHGHGEDKHH AHGDVTEQLL 240
  241 DKSKTQVAAK EKRKRNINLQ GAYLHVLGDS IQSVGVMIGG AIIWYNPEWK IVDLICTLAF 300
  301 SVIVLGTTIN MIRNILEVLM ESTPREIDAT KLEKGLLEME EVVAVHELHI WAITVGKVLL 360
  361 ACHVNIRPEA DADMVLNKVI DYIRREYNIS HVTIQIER

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	79	0.91
Non-Cytoplasmic	80	87	0.84
Transmembrane Helix	88	110	0.89
Cytoplasmic	111	124	0.76
Transmembrane Helix	125	144	0.88
Non-Cytoplasmic	145	159	0.80
Transmembrane Helix	160	181	0.94
Cytoplasmic	182	261	0.98
Transmembrane Helix	262	284	0.94
Non-Cytoplasmic	285	290	0.87
Transmembrane Helix	291	312	0.92
Cytoplasmic	313	398	0.97