YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88196753, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKQPYLNG AYYGPSIPPP PKAHRSYNSP GFGCCCFSCL GSCLRCCGCC ILSLICNILI  60
   61 AVAVILGVAA LILWLIFRPN AVKFYVADAN LNRFSFDPNN NLHYSLDLNF TIRNPNQRVG 120
  121 VYYDEFSVSG YYGDQRFGSA NVSSFYQGHK NTTVILTKIE GQNLVVLGDG ARTDLKDDEK 180
  181 SGIYRINAKL RLSVRFKFWF IKSWKLKPKI KCDDLKIPLG SSNSTGGFKF QPVQCDFDLS 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	53	0.62
Transmembrane Helix	54	77	0.88
Non-Cytoplasmic	78	240	0.62