YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9755825, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.99
Transmembrane Helix	103	124	0.92
Non-Cytoplasmic	125	158	0.96
Transmembrane Helix	159	181	0.91
Cytoplasmic	182	189	0.89
Transmembrane Helix	190	211	0.89
Non-Cytoplasmic	212	216	0.74
Transmembrane Helix	217	237	0.92
Cytoplasmic	238	248	0.84
Transmembrane Helix	249	270	0.90
Non-Cytoplasmic	271	276	0.73
Transmembrane Helix	277	297	0.92
Cytoplasmic	298	355	0.97
Transmembrane Helix	356	379	0.83
Non-Cytoplasmic	380	394	0.80
Transmembrane Helix	395	415	0.91
Cytoplasmic	416	423	0.88
Transmembrane Helix	424	445	0.92
Non-Cytoplasmic	446	454	0.70
Transmembrane Helix	455	479	0.84
Cytoplasmic	480	490	0.87
Transmembrane Helix	491	513	0.88
Non-Cytoplasmic	514	518	0.82
Transmembrane Helix	519	539	0.91
Cytoplasmic	540	560	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSTYAVKG NAAFAFQRRT FSSDRSTTST GIRFAGYKSL ATTGPLYCSG SEAMGATLAR  60
   61 ADNGIQSVMS FSSVKARSVR AQASSDGDEE EAIPLRSEGK SSGTVLPFVG VACLGAILFG 120
  121 YHLGVVNGAL EYLAKDLGIA ENTVLQGKYM MIHFFTPPVN GWIVSSLLAG ATVGSFTGGA 180
  181 LADKFGRTRT FQLDAIPLAI GAFLCATAQS VQTMIVGRLL AGIGIGISSA IVPLYISEIS 240
  241 PTEIRGALGS VNQLFICIGI LAALIAGLPL AANPLWWRTM FGVAVIPSVL LAIGMAFSPE 300
  301 SPRWLVQQGK VSEAEKAIKT LYGKERVVEL VRDLSASGQG SSEPEAGWFD LFSSRYWKVV 360
  361 SVGAALFLFQ QLAGINAVVY YSTSVFRSAG IQSDVAASAL VGASNVFGTA VASSLMDKMG 420
  421 RKSLLLTSFG GMALSMLLLS LSFTWKALAA YSGTLAVVGT VLYVLSFSLG AGPVPALLLP 480
  481 EIFASRIRAK AVALSLGMHW ISNFVIGLYF LSVVTKFGIS SVYLGFAGVC VLAVLYIAGN 540
  541 VVETKGRSLE EIELALTSGA