YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAC40_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE IYKFEPWDLP  60
   61 EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG KERSVKSGNQ VVGTKRTLVF 120
  121 HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ 180
  181 RGGLEKEDKS YYESEHQIPN GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS 240
  241 QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK 300
  301 IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN

Type	Start	End	Confidence
Cytoplasmic	1	311	0.64
Transmembrane Helix	312	332	0.93
Non-Cytoplasmic	333	335	0.58