YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10257483
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCSDEAIP GQPIVLGCGQ LCLDYLVTVA SFPIPDQKIR GTSFKVQGGG NTGNALTCVA  60
   61 RLGLPCRILA KVADDSHGRY MVEELESSGV DTSFCMSAKD GASHFNYVIV DNQTNTRTCI 120
  121 YTPGYPPLLP DDLTESLLLD VLDGVRVLYV NGRSREAELL LAQKAHSKNI PILINAEKKR 180
  181 TGLDELIDLA DYAICSTNFP QEWTGAPSSP SALLSMLIRL PKLKFVIMTL GEHGCVMLER 240
  241 CSSEVSGSEE ETDIDELHES LKQSTDFTSV LPVCNSSLVT RLTGNVTGRL VIVTAEKIPS 300
  301 SELIDTTGAG DAFTGALLYG LCTGMALEEM LTFASRVVSL LLLLLFIPAL FSKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	331	0.57
Transmembrane Helix	332	352	0.85
Cytoplasmic	353	354	0.54