YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALS3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKWDDFFN DYEWLIVFLK GMVKPAAALV VVLLAVILSY SQNLSLEGEM IYSVSRSFLQ  60
   61 LSVIGFVLQF IFNQENSGWI ILAYLFMVSV AGYTAGQRAR HVPRGKYVAG LSILAGTSIT 120
  121 MFLLVLLNVF PFTPRYMIPI AGMLVGNAMT VTGVTMKQLR DDIKMQLNLV ETALALGATP 180
  181 RQATLQQVKR ALVISLSPVL DSCKTVGLIS LPGAMTGMIM GGASPLEAIQ LQIVVMNMMV 240
  241 GAATVSSITS TYLCWPSFFT KAYQLQTHVF SSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.79
Transmembrane Helix	21	41	0.91
Cytoplasmic	42	51	0.77
Transmembrane Helix	52	72	0.81
Non-Cytoplasmic	73	77	0.88
Transmembrane Helix	78	96	0.94
Cytoplasmic	97	106	0.86
Transmembrane Helix	107	129	0.92
Non-Cytoplasmic	130	135	0.82
Transmembrane Helix	136	156	0.92
Cytoplasmic	157	204	0.90
Transmembrane Helix	205	224	0.75
Non-Cytoplasmic	225	232	0.62
Transmembrane Helix	233	255	0.84
Cytoplasmic	256	273	0.77