YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DES1L_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGGREKIS SNEEEREGVM ATDFFWSYTD EPHASRRRQI LSCYPQIRQL FGPDPWAFLK  60
   61 ITLVVILQLS TAAILHNSGW LKILSIAYFF GSFLNHNLFL AIHELSHNLA FSTPVYNRCL 120
  121 GIFANLPIGV PMSVTFQKYH LEHHRFQGVD GIDMDVPTYT EAHLVTNIFA KTIWVFLQLF 180
  181 FYALRPIFIK PKPPGYWEFI NFLIQIVLDV SVVLFFGWRS FAYLILSTFV GGGMHPMAGH 240
  241 FISEHYVFNP NQETYSYYGP LNLLTWSVGY HNEHHDFPRI PGNKLHLVKE IAGEYYEGLE 300
  301 SYKSWSQVIY MYIMDTTVGP YSRMKRKLSK SD

Type	Start	End	Confidence
Cytoplasmic	1	55	0.93
Transmembrane Helix	56	76	0.89
Non-Cytoplasmic	77	82	0.69
Transmembrane Helix	83	102	0.86
Cytoplasmic	103	114	0.73
Transmembrane Helix	115	136	0.73
Non-Cytoplasmic	137	163	0.78
Transmembrane Helix	164	184	0.80
Cytoplasmic	185	196	0.66
Transmembrane Helix	197	218	0.79
Non-Cytoplasmic	219	220	0.54
Transmembrane Helix	221	242	0.61
Cytoplasmic	243	332	0.55