YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST1B_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARIGIFSV FVAVLLSISA FSSAQDLQIV NAERRIDLSS HIVKAFLTLK VENIGKDPAA  60
   61 EMLLAFPPTQ IKNLAMVQAL ATTGKKKKKT YLPLDVKPTE QPDAPNDTGY YRVTFISPLG 120
  121 PGETVSLEVL YILTHSLEPF PVEITQSESQ LVYYHDSAVI LSPYHVKQQT TFIKTPSTRV 180
  181 ESFTSIEPAN RAGKEIKYGP YENRASYSYT PVIIHFENNS PFAVVEELVR EIEISHWGSL 240
  241 QITENYRLTH GGARHKGVFS RVDYQSKRSV SGASSFNALL AVLPPRVNSV YYRDEIGNIS 300
  301 TSHLRTGFRK SELEFEPRYP LFGGWSATFI IGYRVPLEDY LFEASDGRRY LNFTFGCPLV 360
  361 ETIVNKLTIK VVLPEGSKDP SAVLPFTVNQ ELQVKYSYLD IVGRTVVVLQ KDNVVPTHNV 420
  421 PFQVYYTFKP IYMLAEPFML VSAFFLVFVA SLAYVHIDLN IVRK

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	436	0.98
Transmembrane Helix	437	457	0.88
Cytoplasmic	458	464	0.82