YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP12_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.98
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	50	0.95
Transmembrane Helix	51	72	0.93
Cytoplasmic	73	78	0.94
Transmembrane Helix	79	99	0.95
Non-Cytoplasmic	100	121	0.93
Transmembrane Helix	122	145	0.87
Cytoplasmic	146	204	0.98
Transmembrane Helix	205	224	0.90
Non-Cytoplasmic	225	232	0.70
Transmembrane Helix	233	252	0.91
Cytoplasmic	253	261	0.86
Transmembrane Helix	262	284	0.93
Non-Cytoplasmic	285	299	0.82
Transmembrane Helix	300	322	0.85
Cytoplasmic	323	332	0.86
Transmembrane Helix	333	354	0.93
Non-Cytoplasmic	355	355	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFRKTLVS AFVLCLVIFP LLVSAAEEEN QCGGSKGGSA AEKASALKYK IIAFFSILIA  60
   61 GVFGVCLPIF GLKTESNFFM YVKAFAAGVI LATGFVHILP DATESLTSSC LGEEPPWGDF 120
  121 PMTGLVAMAA SILTMLIESF ASGYLNRSRL AKEGKTLPVS TGGEEEHAHT GSAHTHASQG 180
  181 HSHGSLLIPQ DDDHIDMRKK IVTQILELGI VVHSVIIGIS LGASPSVSTI KPLIAAITFH 240
  241 QLFEGFGLGG CISEAKFRVK KIWVMLMFFA LTAPIGIGIG IGVAEIYNEN SPMALKVSGF 300
  301 LNATASGILI YMALVDLVAP LFMNQKTQSS MKIQVACSVS LVVGAGLMSL LAIWA